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http://www.pdb.org/

 

http://www.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb122_2.html

 

Integrating the SignalOnce the transcription factors bind to the different sites in the enhancer DNA sequence, the signal must somehow be sensed and used to activate the gene. In many cases, this is performed using CREB-binding protein or the similar protein p300. This protein is composed of many connected domains, (PDB entries 1l8c, 1kdx, 1jsp, 3biy, 2ka6 and 1kbh), which bind to different proteins in the assembled enhanceosome. Then, a large domain in the center acts as a histone acetyltransferase, modifying histones in nucleosomes and causing them to disassemble and reveal the gene. In the intereferon-b gene, a nucleosome normally covers the start site of transcription, blocking transcription. Assembly of the enhanceosome leads to removal of this nucleosome, allowing the gene to be expressed.