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  Refereed Journal Articles:
  • A. Khojandi, L.M. Maillart, O.A. Prokopyev, "Optimal Planning of Life-Depleting Maintenance Activities" IIE Transactions, accepted for publication, 2013.
  • G. Degirmenci, J.P. Kharoufeh, O.A. Prokopyev, "Maximizing the Lifetime of Query-Based Wireless Sensor Networks," ACM Transactions on Sensor Networks, accepted for publication, 2013.
  • O. Shylo, O.A. Prokopyev, A.J. Schaefer, "Stochastic Operating Room Scheduling for High Volume Specialties under Block Booking," INFORMS Journal on Computing, accepted for publication, 2012.
  • S. Karademir, N. Kong, O.A. Prokopyev, "On Greedy Approximation Algorithms for a Class of Two-Stage Stochastic Assignment Problems," Optimization Methods and Software, accepted for publication, 2012.
  • O. Mostovyi, O.A. Prokopyev, O.V. Shylo, "On Maximum Speedup Ratio of Restart Algorithms Portfolios," INFORMS Journal on Computing, Vol. 25/2 (2013), pp. 222-229.
  • O. Ursulenko, S. Butenko, O.A. Prokopyev, "A Global Optimization Algorithm for Solving the Minimum Multiple Ratio Spanning Tree Problem," Journal of Global Optimization, Vol. 56/3 (2013), pp. 1029-1043.
  • F.M. Pajouh, B. Balasundaram, O.A. Prokopyev, "On Characterization of Maximal Independent Sets via Quadratic Optimization," Journal of Heuristics, Vol. 19/4 (2013), pp. 629-644.
  • A.C. Trapp, O.A. Prokopyev, A.J. Schaefer, "On a Level-Set Characterization of the Integer Programming Value Function and its Application to Stochastic Programming." Operations Research, Vol. 61/2 (2013), pp. 498-511.
  • O.Y. Ozaltin, O.A. Prokopyev, A.J. Schaefer, "Two-Stage Quadratic Integer Programs with Stochastic Right-Hand Sides," Mathematical Programming, Vol. 133/1 (2012), pp. 121-158. //  Test instances
  • O.Y. Ozaltin, O.A. Prokopyev, A.J. Schaefer, M.S. Roberts, "Optimizing the Societal Benefits of the Annual Influenza Vaccine: A Stochastic Programming Approach," Operations Research, Vol. 59/5 (2011), pp. 1131-1143.
  • J. Rajgopal, Z. Wang, A.J. Schaefer, O.A. Prokopyev, "Integrated Design and Operation of Remnant Inventory Supply Chains under Uncertainty," European Journal of Operational Research, Vol. 214/2 (2011), pp 358-364.
  • A.C. Trapp, F. Zink, O.A. Prokopyev, L. Schaefer, "Thermoacoustic Heat Engine Modeling and Optimization," Applied Thermal Engineering, Vol. 31/14-15 (2011), pp. 2518-2528.
  • S. Karademir, O.A. Prokopyev, "A Short Note on Solvability of Systems of Interval Linear Equations," Linear and Multilinear Algebra, , Vol. 59/6 (2011), pp. 707-710.
  • O.V. Shylo, O.A. Prokopyev, J. Rajgopal, "On Algorithm Portfolios and Restart Strategies," Operations Research Letters, , Vol. 39/1 (2011), pp. 49-52.
  • M. Baz, B. Hunsaker, O.A. Prokopyev, "How Much Do We Pay for Using Default Parameters?," Computational Optimization and Applications, Vol. 48/1 (2011), pp. 91-108.
  • O.Y. Ozaltin, O.A. Prokopyev, A.J. Schaefer, "The Bilevel Knapsack Problem with Stochastic Right-Hand Sides," Operations Research Letters, Vol. 38 (2010), pp. 328-333.
  • A. Trapp, O.A. Prokopyev, "Solving Order-Preserving Submatrix Problem via Integer Programming," INFORMS Journal on Computing, Vol. 22 (2010), pp. 387-400.
  • A. Trapp, O.A. Prokopyev, S. Busygin, "Finding Checkerboard Pattern via Fractional 0--1 Programming," Journal of Combinatorial Optimization, Vol. 20 (2010), pp. 1-26.
  • N. Alpay, A. Trapp, O.A. Prokopyev, C. Camacho, "Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting," Bioinformatics, Vol. 26 (2010), pp. 319-325.
  • O.A. Prokopyev, "On Equivalent Reformulations for Absolute Value Equations," Computational Optimization and Applications, 44 (2009), pp. 363-372.
  • O.A. Prokopyev, S. Butenko, A. Trapp, "Checking Solvability of Systems of Interval Linear Equations and Inequalities via Mixed Integer Programming," European Journal of Operational Research, Vol. 199 (2009), pp. 117-121.
  • J. Rajgopal, Z. Wang, A. Schaefer, O.A. Prokopyev, "Effective Management Policies for Remnant Inventory Supply Chains," IIE Transactions, Vol. 41 (2009), pp. 437-447.
  • O. Seref, O.E. Kundakcioglu, O.A. Prokopyev, P.M. Pardalos, "Selective Support Vector Machines," Journal of Combinatorial Optimization, Vol. 17 (2009), pp. 3-20.
  • O.A. Prokopyev, N. Kong, D.L. Martinez-Torres, "The Equitable Dispersion Problem," European Journal of Operational Research, Vol. 197 (2009), pp. 59-67.
  • O. Shylo, O.A. Prokopyev, V. Shylo, "Solving Weighted MAX-SAT via GES," Operations Research Letters, Vol. 36 (2008), pp. 434-438.
  • S. Busygin, O.A. Prokopyev, P.M. Pardalos, "Biclustering in Data Mining," Computers and Operations Research, Vol. 35/9 (2008), pp. 2964-2987.
  • P.M. Pardalos, O.A. Prokopyev, O. Shylo, V. Shylo, "Global Equilibrium Search Applied to the Unconstrained Binary Quadratic Optimization Problem," Optimization Methods and Software, Vol. 23/1 (2008), pp. 129-140.
  • C.A.S. Oliveira, O.A. Prokopyev, P.M. Pardalos, M.G.C. Resende, "Streaming Cache Placement Problems: Complexity and Algorithms," International Journal of Computational Science and Engineering, Vol. 3 (2007), pp. 173-183.
  • S. Busygin, O.A. Prokopyev, P.M. Pardalos, "An Optimization Based Approach for Data Classification", Optimization Methods and Software, Vol. 22/1 (2007), pp. 3-9.
  • M. Min, O.A. Prokopyev, P.M. Pardalos, "Optimal Solutions to Minimum Total Energy Broadcasting Problem in Wireless Ad Hoc Networks", Journal of Combinatorial Optimization, Vol. 11/1 (2006), pp. 59-69.
  • H.-Z. Huang, P. Pardalos, O.A. Prokopyev, "Lower Bound Improvement and Forcing Rule for Quadratic Binary Programming", Computational Optimization and Applications, Vol. 33 (2006), pp. 187-208.
  • W. Chaovalitwongse, O.A. Prokopyev, P.M. Pardalos, "Electroencephalogram (EEG) Time Series Classification: Applications in Epilepsy", Annals of Operations Research, Vol. 148 (2006), pp. 227-250.
  • H. K. Fung, S. Rao, C. A. Floudas, O.A. Prokopyev, P.M. Pardalos, F. Rendl, "Computational Comparison Studies of Quadratic Assignment Like Formulations for the In Silico Sequence Selection Problem in De Novo Protein Design," Journal of Combinatorial Optimization, Vol. 10/1 (2005), pp. 41-60.
  • O.A. Prokopyev, H.-Z. Huang, P.M. Pardalos, "On Complexity of Unconstrained Hyperbolic 0-1 Programming Problems", Operations Research Letters, Vol. 33/3 (2005), pp. 312-318.
  • O.A. Prokopyev, C. Meneses, C.A.S. Oliveira, P.M. Pardalos, "On Multiple-Ratio Hyperbolic 0--1 Programming Problems," Pacific Journal of Optimization, Vol. 1/2 (2005), pp. 327-345.
  • S. Busygin, O.A. Prokopyev, P.M. Pardalos, "Feature Selection for Consistent Biclustering via Fractional 0-1 Programming", Journal of Combinatorial Optimization, Vol. 10/1 (2005), pp. 7-21.
  • W. Chaovalitwongse, P.M. Pardalos, O.A. Prokopyev, "A New Linearization Technique for Multi-Quadratic 0-1 Programming Problems," Operations Research Letters, Vol. 32/6 (2004), pp. 517-522.
  • P.M. Pardalos, W. Chaovalitwongse, L.D. Iasemidis, J.C. Sackellares, D.-S. Shiau, P.R. Carney, O.A. Prokopyev, V.A. Yatsenko, "Seizure Warning Algorithm Based on Optimization and Nonlinear Dynamics," Mathematical Programming, Vol. 101/2 (2004), pp. 365-385.
  • O.A. Prokopyev, P.M. Pardalos, "On Approximability of Boolean Formula Minimization," Journal of Combinatorial Optimization, Vol. 8/2 (2004), pp. 129-135.
  • O.A. Prokopyev, P.M. Pardalos, "Minimum $\epsilon$-equivalent Circuit Size Problem," Journal of Combinatorial Optimization, Vol. 8/4 (2004), pp. 495-502.