SOFTWARES

Late AMD Fundus Image Prediction (website)

Computer-Aided Risk Estimation for Any Age-related Macular Degeneration in Caucasians (website)

KMgene: a unified R package for gene-based association analysis for complex traits
(https://cran.r-project.org/web/packages/KMgene/index.html)
Qi Yan, Zhou Fang and Wei Chen. “KMgene: a unified R package for gene-based association analysis for complex traits”. Bioinformatics, 2018, https://doi.org/10.1093/bioinformatics/bty066.


FSKAT: Gene Based SKAT for Binary Traits in Family Data
F-SKAT2.0
Qi Yan, Hemant K. Tiwari, Nengjun Yi, Guimin Gao, Wan-Yu Lin, Xiang-Yang Lou, and Nianjun Liu. “Sequence Kernel Association Test for Dichotomous Traits in Family Sample under Generalized Linear Mixed Model”. Human Heredity, 79(2):60-68

LKM: Gene Based Kernel Machine Regression for Quantitative Traits in Longitudinal Data
L-KM2.0
Qi Yan, Daniel E. Weeks, Hemant K. Tiwari, Nengjun Yi, Kui Zhang, Guimin Gao, Wan-Yu Lin, Xiang-Yang Lou, Wei Chen and Nianjun Liu. “Rare-Variant Kernel Machine Test for Longitudinal Data for Population and Family Samples”. Human Heredity , 80:126-138.


LFKM: Gene Based Kernel Machine Regression for Quantitative Traits in Longitudinal Family Data
LF-KM2.0
Qi Yan, Daniel E. Weeks, Hemant K. Tiwari, Nengjun Yi, Kui Zhang, Guimin Gao, Wan-Yu Lin, Xiang-Yang Lou, Wei Chen and Nianjun Liu. “Rare-Variant Kernel Machine Test for Longitudinal Data for Population and Family Samples”. Human Heredity, 80:126-138.


MFKM: Gene Based Kernel Machine Regression for Quantitative Traits in Multivariate Family Data
MF-KM1.1
Qi Yan, Daniel E. Weeks, Juan C. Celedon, Hemant K. Tiwari, Bingshan Li, Xiaojing Wang, Wan-Yu Lin, Wei Chen and Nianjun Liu. “Kernel Machine Regression for Multivariate Quantitative Phenotypes in Family Samples”. Genetics, 2015 Dec;201(4):1329-39.


DoubleWeightSKAT-ARTP: Pathway Based Method Testing the Significance of a Pathway
DoubleWeightSKAT-ARTP
Qi Yan, Hemant K. Tiwari, Nengjun Yi, Wan-Yu Lin, Guimin Gao, Xiang-Yang Lou, Xiangqin Cui, and Nianjun Liu. “Kernel Machine Testing Coupled with Rank Truncation Method for Genetic Pathway Analysis”. Genetic Epidemiology, 2014, 38:447-456.