TA Cutler, BM Mills, DJ Lubin, LT Chong, and SN Loh. “Effect of interdomain linker length on an antagonistic folding-unfolding equilibrium between two protein domains.” J. Mol. Biol., 386: 854-868 (2009). [pdf]

LT Chong, JW Pitera, WC Swope, and VS Pande.  “Comparison of computational approaches for predicting the effects of missense mutations on p53 function.” J. Mol. Graph. Model., 27: 978-982 (2009). [pdf]

LT Chong, WC Swope, JW Pitera, and VS Pande.  "Kinetic computational alanine scanning: application to p53 oligomerization." J. Mol. Biol., 257: 1039-1049 (2006). [pdf]

LT Chong, CD Snow, YM Rhee, and VS Pande.  "Dimerization of the p53 oligomerization domain: Identification of a folding nucleus by molecular dynamics simulations." J. Mol. Biol., 345: 869-878 (2005). [pdf]

LT Chong, P Bandyopadhyay, TS Scanlan, ID Kuntz, and PA Kollman.  "Direct Hydroxide Attack is a Plausible Mechanism for Amidase Antibody 43C9."  J. Comp. Chem., 4: 1371-1377 (2003). [pdf]

TS Lee*, LT Chong*, JD Chodera, and PA Kollman.  "An Alternative Explanation for the Catalytic Proficiency of Orotidine 5'-Phosphate Decarboxylase." J. Am. Chem. Soc. 123: 12837-12848 (2001).  [pdf]
* equal authorship

PA Kollman, I Massova, C Reyes, B Kuhn, S Huo, LT Chong, MR Lee, TS Lee, Y Duan, W Wang, O Donini, P Cieplak, J Srinivasan, D Case, and TE Cheatham 3rd.  "Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models."  Accounts of Chemical Research 33: 889-897 (2000). [pdf]

LT Chong, Y Duan, L Wang, I Massova, and PA Kollman.  "Molecular Dynamics Simulation and Free Energy Calculations Applied to Affinity Maturation in Antibody 48G7."  Proc. Natl. Acad. Sci. USA 96: 14330-14335 (1999). [pdf]

K Lin, HS Ateeq, SH Hsiung, LT Chong, CN Zimmerman, A Castro, WC Lee, CE Hammond, S Kalkunte, LL Chen, RB Pepinsky, DR Leone, AG Sprague, WM Abraham, A Gill, RR Lobb, and SP Adams.  "Selective, Tight-binding Inhibitors of Integrin Alpha-4-beta-1 that Inhibit Allergic Airway Responses."  J. Med. Chem. 42: 920-934 (1999). [pdf]

LT Chong, SE Dempster, ZS Hendsch, L-P Lee, and B Tidor.  "Computation of Electrostatic Complements to Proteins: A Case of Charge Stabilized Binding." Protein Sci. 7: 206-210 (1998). [pdf]