Recombination Directionality Factors

     The list of RDFs includes proteins that have been annotated as an excisionase, xis, cox, excisase or identifed in similarity based searches. The protein names are either the name of the DNA element in the case of phages, transposons and plasmids, or the gene name in the case of unnamed prophages and chromosomal genes. Familiy groups are based on a phylogenetic analysis of the sequences. DNA type indicates the type of DNA element in which the gene is located. The host is the organism which is infectecd by the DNA element. Int Type is the type of integrase that the excisionase has been identified in conjunction with. HTH indicates the presence of a Helix-Turn-Helix DNA binding motif as determined by the methods of Dodd and Egan. The isoelectric focusing points (pI) were calculated using Compute pI/MW on the Expasy Web Page The list contains links to pages for protein families and to a page for each protein.

Name
Family
DNA Type
Host
Int Type
HTH
pI
11miscPhagestaphylococcus
tyr
-
4.13
16-3miscPhageRhizobium meliloti
tyr
-
10.95
186miscPhageEscherichia coli
tyr
+
9.75
434LambdaPhageEscherichia coli
tyr
-
11.16
APSE-1P22PhageAcyrthosiphon pisum
tyr
+
9.68
B2168_C1_172L5ProphageMycobacteria leprae
none
+
9.81
D29L5Phagemycobacteria
tyr
+
11.49
D3miscPhagePseudomonas aeruginosa
tyr
+
8.89
DR1455L5ProphageDeinococcus radiodurans
none
+
10.36
e14LambdaProphageEscherichia coli
tyr
-
9.65
Gifsy-1miscPhageSalmonella typhimurium
tyr
+
10.28
H19JLambdaPhageEscherichia coli
tyr
-
11.16
HK022LambdaPhageEscherichia coli
tyr
-
11.16
HK97LambdaPhageEscherichia coli
tyr
-
11.16
HP1HP1PhageHaemophilus influenzae
tyr
+
8.68
ICESt1Tn5276TransposonStreptococcus thermophilus
tyr
-
9.72
K139HP1PhageVibrio cholerae
tyr
-
8.82
L5L5Phagemycobacteria
tyr
+
10.14
L54aL54aPhagestaphylococcal
tyr
-
4.53
LambdaLambdaPhageEscherichia coli
tyr
-
11.16
mv4miscPhageLactobacillus plantarum
tyr
-
6.51
Mx8miscPhageMyxococcus xanthus
tyr
+
10.89
P2P2PhageEscherichia coli
tyr
+
9.34
P21LambdaPhageEscherichia coli
tyr
-
9.58
P22P22PhageEscherichia coli
tyr
+
9.42
P4SLP1PhageEscherichia coli
tyr
+
9.51
phi-80miscPhageEscherichia coli
tyr
-
8.93
phi-R67HP1ProphageEscherichia coli
none
-
8.45
phi-R73SLP1PhageEscherichia coli
tyr
+
9.51
phig1emiscPhageLactobacillus
tyr
-
4.57
pNL1pSAM2plasmidSphingomonas aromaticivorans
tyr
+
9.47
pSAM2pSAM2plasmidStreptomyces ambofaciens
tyr
+
9.97
pSE101pSAM2plasmidSaccharopolyspora erythrae
tyr
-
11.38
pSE211pSAM2plasmidSaccharopolyspora erythrae
tyr
-
9.51
PspuLambdaProphagePseudomonas putida
tyr
-
9.18
pXO1L54aplasmidBacillus anthracis
tyr
+
6.87
Rv1584cmiscProphageMycobacteria tuberculosis
ser
-
10.69
Rv2310pSAM2ProphageMycobacteria tuberculosis
tyr
+
9.6
Rv2657cL5ProphageMycobacteria tuberculosis
tyr
+
9.18
Rv3750cpSAM2ProphageMycobacteria tuberculosis
tyr
+
7.92
S2HP1PhageHaemophilus influenzae
tyr
-
9.67
SCE29.20cpSAM2ProphageStreptomyces coelicolor
tyr
+
10.38
SCE68.26cL5ProphageStreptomyces coelicolor
none
+
8.25
SfVP22PhageShigella flexneri
tyr
+
9.47
SfXP22PhageShigella flexneri
tyr
+
9.51
SgiImiscProphageSalmonella enterica DT104
tyr
+
9.43
SLP1SLP1plasmidStreptomyces coelicolor
tyr
-
10.27
T12L54aPhageStreptococcus pyogenes
tyr
-
5.15
TM1pSAM2ProphageArthrobactersp.TM1
none
+
6.93
Tn1545Tn916TransposonStreptococcus pneumoniae
tyr
-
9.45
Tn1549Tn916TransposonEnterococcus faecalis
tyr
-
8.03
Tn4555miscTransposonBacteroides fragilis
tyr
-
7.83
Tn5252Tn5276TransposonStreptococcus pneumoniae
tyr
+
10.56
Tn5276Tn5276TransposonLactococcus lactis
tyr
-
9.3
Tn5382Tn916TransposonEnterococcus faecium
tyr
-
9.52
Tn916Tn916TransposonEnterococcus faecalis
tyr
-
9.45
TP901-1miscPhageLactococcus lactis
ser
-
9.22
VT2-Sa(933W)miscPhageEscherichia coli
tyr
-
9.36
WPhiP2PhageEscherichia coli
tyr
-
6.58
xisHmiscChromosomalanabaena
ser
-
4.78
xisImiscChromosomalanabaena
ser
-
5.88
ydaQmiscProphageEscherichia coli
tyr
-
9.25
yp43SLP1ProphageYersinia pestis
tyr
+
9.69