BioSci 1540 Links |
|
| Pittsburgh Bioinformatics Entities: | Nucleic Acid Databases |
| Pitt Center for Simulation and Modeling (where Frank lives) | GenBank (NCBI) |
| UPMC DBMI (Biomedical Informatics) | EMBL (EBI) |
| UPMC MMBioS (Multiscale Modeling of Biological Systems) | UCSC Genome Bioinformatics |
| UPMC CSB (Computational and Systems Biology) | |
| UPMC IPM (Personalized Medicine) | Protein Databases |
| CMU CB (Computatonal Biology) | UniProt |
| Tools | Protein Structure Databases |
| NotePad++ and Text Wrangler | RCSB Protein Data Bank |
| Clustal Ω & SeaView | The Protein Model Portal |
| GenePalette (If running Mac 10.7 or above use Unix version) | |
| VMD & NAMD | Transcriptomics & Proteomics |
| SSH client for Windows | SIB ExPASy |
| SCP client for Mac, Windows, or Linux | |
| Protein Family Databases | |
| Bioinformatics Centers | Pfam (EBI) |
| NCBI (National Center for Biotech. Info.) | Prosite (Expasy) |
| EBI (European Bioinformatics Institute) | NCBI Conserved Domains Database (NCBI) |
| DDBJ (DNA Data Bank of Japan) | |
| SIB (Swiss Institute of Bioinformatics) | |
| Genomes | |
| Human (H.sapiens) | |
| Mouse (M. musculus) | |
| Plant (A. thaliana) | |
| Fruitfly (D. melanogaster) | |
| Worm (C. elegans) | |
| Yeast (S. cerevisiae) | |
| Bacteria (E. coli) | |
Back to Home Page
Last Updated: 20 April 2015
Question or Comments: epolinko@pitt.edu
© 2000 University of Pittsburgh